In this exercise, the goal is to successfully execute an AlphaFold prediction on the HPC cluster. The steps you should take are described in the PowerPoint presentation. These steps are specifically for usage via the web interface.
In-depth steps on the command line are described in the tutorial material online:
To summarize, you will need to cover the following steps:
AlphaFold experiments will often require more than 30 minutes, up to multiple hours. However, if your run does not crash in the first minutes, it is likely to succeed to the end.
Troubleshooting hints are found at https://elearning.vib.be/courses/alphafold/lessons/alphafold-on-the-hpc/topic/troubleshooting/.