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Containers as cornerstone of reproducible data analysis

part of the Capita Selecta Lecture Series at UGhent

Course Content

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Background on Reproducibility and technical components 4 Topics
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Lesson Content
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Elements for Reproducibility
A quick comparison of virtualisation and containers
Container Setup explained
What is Containerization?
Containers and the reasons for their popularity 17 Topics
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Lesson Content
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Background about Docker
Typical use cases
Advantages of Docker
Docker components
Basics of the Docker images
Explore Docker hub
Get tools from Biocontainers
Building the recipes for images
Using Biocontainers and Bioconda for bioinformatics tools
Docker command line options
Dockerfile tips
One tool, one image or some tools, one image
Background about Singularity
Singularity Architecture
Strengths and Weaknesses
Building Singularity images
Using the Singularity containers to run commands
bioinformatics_core_rgb_neg.png

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